My recommendation, order the GDE hot tune and trans tune, have them waiting at home for install as soon as possible after the AEM is completed. Also send in the paperwork required for the settlement money.
Any tune can void your warranty, but the GDE tunes are not being detected. Either the dealers aren't looking, or they're not readily visible, or both. Mine haven't been detected in the 85k I've been tuned.
The tunes will transform your truck from what you currently know. Makes it so much more drive-able.